Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAB2015Hypothetical protein. (477 aa)    
Predicted Functional Partners:
PAB0687
Putative methyltransferase.
 
     0.773
PAB1618
ATPase of the AAA superfamily, putative.
  
     0.686
PAB2280
Hypothetical protein.
  
     0.633
moeA-2
moeA-2 molybdenum cofactor biosynthesis protein.
       0.627
PAB0993
Hypothetical protein.
  
     0.614
PAB1252
Fragment pyrolysin related.
  
     0.596
PAB1359
Hypothetical protein, containing ATP/GTP-binding site motif A.
  
     0.567
PAB1532
Hypothetical protein.
  
     0.556
PAB1102
Hypothetical protein.
  
     0.542
PAB1586
Oligosaccharyl transferase, STT3 subunit.
  
     0.539
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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