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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galE-1galE-1 UDP-glucose 4-epimerase). (307 aa)    
Predicted Functional Partners:
ugd
GDP-mannose or UDP-glucose6-dehydrogenase.
 0.975
PAB0771
UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPgp) (alpha-D-glucosyl-1-phosphate uridylyltransferase) (uridine diphosphoglucose pyrophosphorylase).
 
 
 0.938
PAB1299
galE-2 UDP-glucose 4-epimerase.
 
  
 
0.911
rps3AE
rps3AE SSU ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.906
rps5
rps5P SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
  
 0.903
rps14
rps14P SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles.
   
 0.900
rps19
rps19P SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.897
rps12P
rps12P SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
   
 0.896
rps9P
rps9P SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
 
 0.895
rps3
rps3P SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.891
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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