Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
PAB2149hsdM type I restriction modification enzyme, subunit M. (623 aa)    
Predicted Functional Partners:
PAB2150
hsdS type I restriction-modification enzyme, S subunit.
 
 0.999
PAB2154
hsdR type I restriction-modification enzyme, R subunit.
 
  
 0.993
PAB2152
Hypothetical protein, containing ATP/GTP-binding site motif A.
       0.715
PAB0539
Hypothetical protein.
 
    0.631
PAB3079
Hypothetical protein.
       0.571
PAB1903
Hypothetical protein.
  
    0.566
PAB1496
Zinc metallopeptidase, putative.
 
     0.524
PAB2147
ABC-type transport system, ATPase component, substrate unknown.
       0.458
PAB2148
ABC-type transport system, ATPase component, substrate unknown.
       0.458
PAB0923
Putative RNA methylase, UPF0020 family.
      
 0.411
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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