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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB2177Short-chain alcohol dehydrogenase, putative glucose-1-dehydrogenase. (263 aa)    
Predicted Functional Partners:
fabG
Short-chain alcohol dehydrogenase, putative glucose-1-dehydrogenase.
  
  
 
0.919
PAB2178
pepQ-1 X-pro dipeptidase.
 
 
 0.735
PAB2176
Hypothetical 2-acetyl-1-alkylglycerophosphocholine esterase.
 
  
 0.711
PAB0793
Sulfatase.
  
 
 0.688
PAB1591
Hypothetical protein.
   
 
 0.643
PAB1592
Hypothetical protein.
   
 
 0.643
PAB2174
Hypothetical sugar symporter.
       0.610
PAB2175
Hypothetical sugar symporter.
       0.610
rad32
Rad32/mre11 DNA repair protein (EC 3.1.-.-); Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. Belongs to the MRE11/RAD32 family.
  
 
 0.591
glpk
glpK glycerol kinase (EC 2.7.1.30); Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
  
 
 0.539
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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