Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAB2200Hypothetical protein. (350 aa)    
Predicted Functional Partners:
psmB1
psmB proteasome, subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
       0.906
PAB0865
Predicted dioxygenase.
 
     0.756
PAB2202
Oligosaccharyl transferase, STT3 subunit.
 
     0.753
thrC-2
thrC threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
       0.717
hemU-2
hemU iron (III) ABC transporter, permease protein.
       0.613
hemV-2
hemV-2 iron (III) ABC transporter, ATP-binding protein.
       0.613
PAB0993
Hypothetical protein.
  
     0.574
glmS
glmS Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.567
PAB2269
Metallo-beta-lactamase superfamily protein; Belongs to the UPF0173 family.
       0.561
tldD
tldD-like modulator of DNA gyrase, tldD protein homolog.
       0.560
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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