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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB2200Hypothetical protein. (350 aa)    
Predicted Functional Partners:
psmB1
psmB proteasome, subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
       0.799
PAB2202
Oligosaccharyl transferase, STT3 subunit.
 
     0.754
PAB0993
Hypothetical protein.
  
     0.574
glmS
glmS Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.569
tldD
tldD-like modulator of DNA gyrase, tldD protein homolog.
       0.561
tldE
tldD-like modulator of DNA gyrase, tldD protein homolog.
       0.561
PAB1252
Fragment pyrolysin related.
  
     0.558
PAB1102
Hypothetical protein.
  
     0.542
PAB0206
Hypothetical protein.
  
     0.537
PAB0241
Probable protease, caaX family.
  
     0.520
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.