STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB2294asnA-1 L-asparaginase (EC 3.5.1.1). (340 aa)    
Predicted Functional Partners:
asnA-2
asnA-2 L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase) (asparaginase 2).
    
 0.918
nadB
nadB L-aspartate oxidase (EC 1.4.3.16) (quinolinate synthetase B); Catalyzes the oxidation of L-aspartate to iminoaspartate.
  
 
 0.916
asnB
Asparagine synthase (glutamine-hydrolyzing) (EC 6.3.5.4).
     
 0.911
aspB-2
aspC-2 aspartate aminotransferase (EC 2.6.1.1).
    
 0.911
PAB1605
Putative putative asparagine synthetase (glutamine-hydrolyzing) (EC 6.3.5.4).
     
 0.911
racD-1
racD-1 aspartate racemase.
    
 0.909
PAB2073
racD-2 aspartate racemase.
    
 0.909
pyrB
pyrB aspartate carbamoyltransferase, catalytic subunit.
    
 0.902
purA
purA adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
  0.900
pyrI
pyrI aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.
     
  0.900
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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