Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PAB7359Hypothetical protein, asnC family transcription regulator related. (75 aa)    
Predicted Functional Partners:
PAB1938
Transcriptional regulatory protein, Lrp-AsnC family.
   
 
 0.858
PAB0564
Predicted protein kinase, putative.
 
     0.830
cysS
cysS cysteinyl-tRNA synthetase.
 
     0.612
PAB0004
Hypothetical protein.
  
     0.522
PAB0654
Hypothetical protein, DUF54 family; Belongs to the UPF0201 family.
  
     0.436
nop10
Small nucleolar ribonucleoprotein, trans-acting factor intervening in ribosome biogenesis; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA.
  
     0.432
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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