Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADE83841.1 | ADE84214.1 | RCAP_rcc00076 | RCAP_rcc00449 | Peptidase, M23B subfamily. | Conserved hypothetical protein. | 0.550 |
ADE83841.1 | ADE84233.1 | RCAP_rcc00076 | RCAP_rcc00468 | Peptidase, M23B subfamily. | Rhomboid family protein. | 0.564 |
ADE83841.1 | ADE86891.1 | RCAP_rcc00076 | RCAP_rcc03167 | Peptidase, M23B subfamily. | Protein of unknown function DUF214, permase predicted. | 0.938 |
ADE83841.1 | amiC | RCAP_rcc00076 | RCAP_rcc01745 | Peptidase, M23B subfamily. | N-acetylmuramoyl-L-alanine amidase AmiC. | 0.627 |
ADE83841.1 | ctpA | RCAP_rcc00076 | RCAP_rcc00075 | Peptidase, M23B subfamily. | C-terminal processing peptidase; Belongs to the peptidase S41A family. | 0.920 |
ADE83841.1 | gpmI | RCAP_rcc00076 | RCAP_rcc00077 | Peptidase, M23B subfamily. | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.853 |
ADE83841.1 | nudH | RCAP_rcc00076 | RCAP_rcc00074 | Peptidase, M23B subfamily. | (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.788 |
ADE83841.1 | rlmH | RCAP_rcc00076 | RCAP_rcc00078 | Peptidase, M23B subfamily. | Protein of unknown function DUF163; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.731 |
ADE83841.1 | rsfS | RCAP_rcc00076 | RCAP_rcc00079 | Peptidase, M23B subfamily. | Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.726 |
ADE83841.1 | tolA | RCAP_rcc00076 | RCAP_rcc03197 | Peptidase, M23B subfamily. | TolA protein. | 0.600 |
ADE84214.1 | ADE83841.1 | RCAP_rcc00449 | RCAP_rcc00076 | Conserved hypothetical protein. | Peptidase, M23B subfamily. | 0.550 |
ADE84214.1 | ADE84233.1 | RCAP_rcc00449 | RCAP_rcc00468 | Conserved hypothetical protein. | Rhomboid family protein. | 0.771 |
ADE84214.1 | ADE86891.1 | RCAP_rcc00449 | RCAP_rcc03167 | Conserved hypothetical protein. | Protein of unknown function DUF214, permase predicted. | 0.549 |
ADE84214.1 | tolA | RCAP_rcc00449 | RCAP_rcc03197 | Conserved hypothetical protein. | TolA protein. | 0.515 |
ADE84233.1 | ADE83841.1 | RCAP_rcc00468 | RCAP_rcc00076 | Rhomboid family protein. | Peptidase, M23B subfamily. | 0.564 |
ADE84233.1 | ADE84214.1 | RCAP_rcc00468 | RCAP_rcc00449 | Rhomboid family protein. | Conserved hypothetical protein. | 0.771 |
ADE84233.1 | ADE86891.1 | RCAP_rcc00468 | RCAP_rcc03167 | Rhomboid family protein. | Protein of unknown function DUF214, permase predicted. | 0.679 |
ADE84233.1 | amiC | RCAP_rcc00468 | RCAP_rcc01745 | Rhomboid family protein. | N-acetylmuramoyl-L-alanine amidase AmiC. | 0.661 |
ADE84233.1 | tolA | RCAP_rcc00468 | RCAP_rcc03197 | Rhomboid family protein. | TolA protein. | 0.570 |
ADE86891.1 | ADE83841.1 | RCAP_rcc03167 | RCAP_rcc00076 | Protein of unknown function DUF214, permase predicted. | Peptidase, M23B subfamily. | 0.938 |
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