STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE85178.1TonB-dependent siderophore receptor. (710 aa)    
Predicted Functional Partners:
fepB1
Ferric enterobactin-binding periplasmic protein FepB-1.
 
  
 0.814
hemS
Hemin transport protein HmuS.
      
 0.812
efeU
Ferrous iron permease EfeU.
   
  
 0.785
ADE85183.1
Siderophore-interacting protein.
 
  
 0.733
hmuS
Hemin transport protein HmuS.
      
 0.730
fghA
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
      
 0.712
fepC1
Ferric enterobactin transport ATP-binding protein FepC-1.
 
  
 0.642
ADE86168.1
AMP-dependent synthetase and ligase family protein.
   
  
 0.609
chvG
Sensor histidine kinase ChvG.
      
 0.608
ADE87049.1
Hemimethylated DNA-binding protein family.
      
 0.608
Your Current Organism:
Rhodobacter capsulatus
NCBI taxonomy Id: 272942
Other names: R. capsulatus SB 1003, Rhodobacter capsulatus SB 1003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.