Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADE85692.1 | ADE86168.1 | RCAP_rcc01948 | RCAP_rcc02438 | Lipopolysaccharide biosynthesis family protein. | AMP-dependent synthetase and ligase family protein. | 0.642 |
ADE85692.1 | etp | RCAP_rcc01948 | RCAP_rcc03127 | Lipopolysaccharide biosynthesis family protein. | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.592 |
ADE85692.1 | wza | RCAP_rcc01948 | RCAP_rcc01960 | Lipopolysaccharide biosynthesis family protein. | Polysaccharide export protein Wza. | 0.945 |
ADE85692.1 | wzb | RCAP_rcc01948 | RCAP_rcc01959 | Lipopolysaccharide biosynthesis family protein. | Protein-tyrosine-phosphatase Wzb; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.592 |
ADE85692.1 | wzc | RCAP_rcc01948 | RCAP_rcc01958 | Lipopolysaccharide biosynthesis family protein. | Tyrosine-protein kinase Wzc. | 0.650 |
ADE85692.1 | xanB | RCAP_rcc01948 | RCAP_rcc01935 | Lipopolysaccharide biosynthesis family protein. | Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.765 |
ADE85707.1 | gid | RCAP_rcc01963 | RCAP_rcc01962 | Conserved hypothetical protein. | Glucose-inhibited division protein A; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.606 |
ADE85707.1 | gluQ | RCAP_rcc01963 | RCAP_rcc01961 | Conserved hypothetical protein. | glutamyl-Q tRNA(Asp) synthetase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon (By similarity); Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. | 0.657 |
ADE85707.1 | wza | RCAP_rcc01963 | RCAP_rcc01960 | Conserved hypothetical protein. | Polysaccharide export protein Wza. | 0.411 |
ADE85707.1 | wzb | RCAP_rcc01963 | RCAP_rcc01959 | Conserved hypothetical protein. | Protein-tyrosine-phosphatase Wzb; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.411 |
ADE86168.1 | ADE85692.1 | RCAP_rcc02438 | RCAP_rcc01948 | AMP-dependent synthetase and ligase family protein. | Lipopolysaccharide biosynthesis family protein. | 0.642 |
ADE86168.1 | etp | RCAP_rcc02438 | RCAP_rcc03127 | AMP-dependent synthetase and ligase family protein. | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.550 |
ADE86168.1 | wzb | RCAP_rcc02438 | RCAP_rcc01959 | AMP-dependent synthetase and ligase family protein. | Protein-tyrosine-phosphatase Wzb; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.550 |
ADE86168.1 | wzc | RCAP_rcc02438 | RCAP_rcc01958 | AMP-dependent synthetase and ligase family protein. | Tyrosine-protein kinase Wzc. | 0.642 |
ADE86168.1 | xanB | RCAP_rcc02438 | RCAP_rcc01935 | AMP-dependent synthetase and ligase family protein. | Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family. | 0.648 |
etp | ADE85692.1 | RCAP_rcc03127 | RCAP_rcc01948 | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Lipopolysaccharide biosynthesis family protein. | 0.592 |
etp | ADE86168.1 | RCAP_rcc03127 | RCAP_rcc02438 | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | AMP-dependent synthetase and ligase family protein. | 0.550 |
etp | hflC | RCAP_rcc03127 | RCAP_rcc02400 | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | HflC protein; HflC and HflK could regulate a protease. | 0.425 |
etp | wzb | RCAP_rcc03127 | RCAP_rcc01959 | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Protein-tyrosine-phosphatase Wzb; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.960 |
etp | wzc | RCAP_rcc03127 | RCAP_rcc01958 | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Tyrosine-protein kinase Wzc. | 0.648 |
page 1 of 3