Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
mtlKMannitol 2-dehydrogenase. (478 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.986
polS
Sorbitol dehydrogenase.
  
 0.959
cscK
Fructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.958
ADE85768.1
Polyols ABC transporter, permease protein.
 
  
 0.954
fruA
PTS system, fructose-specific EIIBC component.
  
 
 0.946
fruB
Multiphosphoryl transfer protein.
  
  
 0.944
ADE85767.1
Polyols ABC transporter, permease protein.
 
  
 0.910
ADE85766.1
Polyols ABC transporter, periplasmic polyols-binding protein.
 
  
 0.902
ADE85769.1
Polyols ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.856
ADE85765.1
Transcriptional regulator, DeoR family.
 
   
 0.763
Your Current Organism:
Rhodobacter capsulatus
NCBI taxonomy Id: 272942
Other names: R. capsulatus SB 1003, Rhodobacter capsulatus SB 1003
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