STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADE85967.1Radical SAM family protein. (408 aa)    
Predicted Functional Partners:
ADE85965.1
Oxidoreductase/nitrogenase, component 1.
 
     0.797
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.796
ADE85964.1
Oxidoreductase/nitrogenase, component 1.
 
     0.790
nifH2
Nitrogenase iron protein-2; Belongs to the NifH/BchL/ChlL family.
 
     0.679
tpa
Taurine--pyruvate aminotransferase; Catalyzes the degradation of taurine into alanine and sulfoacetaldehyde; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.638
comF
Competence protein F.
     
 0.636
anfO
Nitrogenase iron-iron accessory protein AnfO.
  
     0.605
hemA
5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.586
bioF
8-amino-7-oxononanoate synthase.
  
  
 0.586
ADE85912.1
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.520
Your Current Organism:
Rhodobacter capsulatus
NCBI taxonomy Id: 272942
Other names: R. capsulatus SB 1003, Rhodobacter capsulatus SB 1003
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