STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frcformyl-CoA transferase; Belongs to the CoA-transferase III family. (382 aa)    
Predicted Functional Partners:
gcdH
glutaryl-CoA dehydrogenase.
 
 0.692
ADE86373.1
Aminotransferase, class IV.
  
  
 0.616
pabB
Para-aminobenzoate synthase, component I.
     
 0.609
ADE86376.1
Protein of unknown function DUF461.
       0.538
ADE86166.1
Phosphopantetheine-binding domain protein.
  
 
 0.461
ADE86370.1
Lipocalin family protein.
       0.456
ADE86371.1
Lipoprotein, putative.
       0.456
ADE86372.1
Oxidoreductase, aldo/keto reductase family.
       0.456
pta
Phosphate acetyltransferase.
  
 
 0.455
fadB
Fatty acid oxidation complex, alpha subunit.
  
 
 0.447
Your Current Organism:
Rhodobacter capsulatus
NCBI taxonomy Id: 272942
Other names: R. capsulatus SB 1003, Rhodobacter capsulatus SB 1003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.