Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADE84259.1 | putR | RCAP_rcc00494 | RCAP_rcc02648 | Transcriptional regulator, AsnC/Lrp family. | Proline dehydrogenase transcriptional activator. | 0.703 |
ADE86376.1 | putA | RCAP_rcc02646 | RCAP_rcc02647 | Protein of unknown function DUF461. | Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.580 |
ADE86376.1 | putR | RCAP_rcc02646 | RCAP_rcc02648 | Protein of unknown function DUF461. | Proline dehydrogenase transcriptional activator. | 0.417 |
ctrA | ftsK | RCAP_rcc01663 | RCAP_rcc03328 | Cell cycle transcriptional regulator CtrA. | Cell division protein FtsK. | 0.420 |
ctrA | ntrX | RCAP_rcc01663 | RCAP_rcc01800 | Cell cycle transcriptional regulator CtrA. | Nitrogen assimilation regulatory protein NtrX. | 0.553 |
ctrA | ntrY | RCAP_rcc01663 | RCAP_rcc01799 | Cell cycle transcriptional regulator CtrA. | Nitrogen regulation protein NtrY. | 0.640 |
ctrA | putR | RCAP_rcc01663 | RCAP_rcc02648 | Cell cycle transcriptional regulator CtrA. | Proline dehydrogenase transcriptional activator. | 0.441 |
ftsK | ctrA | RCAP_rcc03328 | RCAP_rcc01663 | Cell division protein FtsK. | Cell cycle transcriptional regulator CtrA. | 0.420 |
ftsK | putA | RCAP_rcc03328 | RCAP_rcc02647 | Cell division protein FtsK. | Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.437 |
ftsK | putR | RCAP_rcc03328 | RCAP_rcc02648 | Cell division protein FtsK. | Proline dehydrogenase transcriptional activator. | 0.612 |
gst | putR | RCAP_rcc00485 | RCAP_rcc02648 | Glutathione S-transferase; Belongs to the GST superfamily. | Proline dehydrogenase transcriptional activator. | 0.491 |
ilvE1 | putR | RCAP_rcc02765 | RCAP_rcc02648 | Branched-chain-amino-acid transaminase-1; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | Proline dehydrogenase transcriptional activator. | 0.581 |
ntrX | ctrA | RCAP_rcc01800 | RCAP_rcc01663 | Nitrogen assimilation regulatory protein NtrX. | Cell cycle transcriptional regulator CtrA. | 0.553 |
ntrX | ntrY | RCAP_rcc01800 | RCAP_rcc01799 | Nitrogen assimilation regulatory protein NtrX. | Nitrogen regulation protein NtrY. | 0.998 |
ntrX | putR | RCAP_rcc01800 | RCAP_rcc02648 | Nitrogen assimilation regulatory protein NtrX. | Proline dehydrogenase transcriptional activator. | 0.576 |
ntrY | ctrA | RCAP_rcc01799 | RCAP_rcc01663 | Nitrogen regulation protein NtrY. | Cell cycle transcriptional regulator CtrA. | 0.640 |
ntrY | ntrX | RCAP_rcc01799 | RCAP_rcc01800 | Nitrogen regulation protein NtrY. | Nitrogen assimilation regulatory protein NtrX. | 0.998 |
ntrY | putR | RCAP_rcc01799 | RCAP_rcc02648 | Nitrogen regulation protein NtrY. | Proline dehydrogenase transcriptional activator. | 0.420 |
putA | ADE86376.1 | RCAP_rcc02647 | RCAP_rcc02646 | Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Protein of unknown function DUF461. | 0.580 |
putA | ftsK | RCAP_rcc02647 | RCAP_rcc03328 | Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | Cell division protein FtsK. | 0.437 |
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