STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0007IMG reference gene:2512954990; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX). (374 aa)    
Predicted Functional Partners:
RSP_0008
Putative transporter, DME family, DMT superfamily; IMG reference gene:2512954991; PFAM: EamA-like transporter family.
  
  
 0.714
RSP_0009
Hypothetical protein; IMG reference gene:2512954992.
       0.660
RSP_0006
Putative transporter, DMT superfamily; IMG reference gene:2512954989; PFAM: EamA-like transporter family.
     
 0.586
RSP_2196
3-hydroxyacyl-CoA dehydrogenase; IMG reference gene:2512954124; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
 
  
 0.586
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.581
RSP_0011
Putative hydrolase or acyltransferase (alpha/beta hydrolase); IMG reference gene:2512954994; extended by 5 aa.
     
 0.577
RSP_2718
Putative outer membrane protein; IMG reference gene:2512954663.
 
  
 0.506
RSP_3535
3-hydroxyacyl-CoA dehydrogenase; IMG reference gene:2512957046; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.499
RSP_0014
Transcriptional regulator, TetR family; IMG reference gene:2512954996; PFAM: Bacterial regulatory proteins, tetR family.
       0.470
RSP_0842
Putative porin; IMG reference gene:2512955871.
  
  
 0.449
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.