STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0008Putative transporter, DME family, DMT superfamily; IMG reference gene:2512954991; PFAM: EamA-like transporter family. (321 aa)    
Predicted Functional Partners:
RSP_0009
Hypothetical protein; IMG reference gene:2512954992.
  
   0.883
RSP_0007
IMG reference gene:2512954990; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
  
 0.714
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.655
RSP_0011
Putative hydrolase or acyltransferase (alpha/beta hydrolase); IMG reference gene:2512954994; extended by 5 aa.
  
    0.636
RSP_1327
Putative flagellar basal body rod protein; IMG reference gene:2512956373; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins.
   
   0.604
RSP_0014
Transcriptional regulator, TetR family; IMG reference gene:2512954996; PFAM: Bacterial regulatory proteins, tetR family.
       0.506
RSP_0013
Polyphosphate kinase 2, PA0141 family; IMG reference gene:2512954995; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate kinase 2, PA0141 family.
       0.504
RSP_0006
Putative transporter, DMT superfamily; IMG reference gene:2512954989; PFAM: EamA-like transporter family.
     
 0.473
RSP_1842
Putative transporter, DME family, DMT superfamily; IMG reference gene:2512953751; PFAM: EamA-like transporter family.
  
    0.462
cheR1
Putative MCP methyltransferase, CheR1; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
   
    0.457
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.