STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0011Putative hydrolase or acyltransferase (alpha/beta hydrolase); IMG reference gene:2512954994; extended by 5 aa. (322 aa)    
Predicted Functional Partners:
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
       0.843
RSP_0009
Hypothetical protein; IMG reference gene:2512954992.
  
   0.791
RSP_0014
Transcriptional regulator, TetR family; IMG reference gene:2512954996; PFAM: Bacterial regulatory proteins, tetR family.
 
    0.786
RSP_0013
Polyphosphate kinase 2, PA0141 family; IMG reference gene:2512954995; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate kinase 2, PA0141 family.
  
    0.708
RSP_0008
Putative transporter, DME family, DMT superfamily; IMG reference gene:2512954991; PFAM: EamA-like transporter family.
  
    0.636
rpoH2
RNA polymerase, sigma 32 subunit, RpoH; IMG reference gene:2512955616; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; alternative sigma factor RpoH.
 
   
 0.611
RSP_0007
IMG reference gene:2512954990; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
     
 0.577
RSP_1534
Putative acyl carrier protein; IMG reference gene:2512953427.
  
 
 0.542
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.542
acpP1
Acyl carrier protein, AcpP; IMG reference gene:2512954726; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
  
 
 0.542
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.