STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0018Putative transcriptional regulator, gntR family; IMG reference gene:2512955000; PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II. (467 aa)    
Predicted Functional Partners:
RSP_0019
Putative conserved small protein; IMG reference gene:2512955001; PFAM: Domain of unknown function (DUF1127).
  
    0.616
RSP_0592
Putative lipase/esterase; IMG reference gene:2512955608; PFAM: alpha/beta hydrolase fold.
   
  
 0.585
RSP_1920
Pyridoxal kinase; IMG reference gene:2512953832; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: pyridoxal kinase; extended by 17 aa; Belongs to the pyridoxine kinase family.
  
  
 0.581
RSP_0977
Hypothetical protein; IMG reference gene:2512956014.
  
     0.527
RSP_6052
Hypothetical protein; IMG reference gene:2512954373.
  
     0.467
RSP_2348
Hypothetical protein; IMG reference gene:2512954285.
   
    0.457
fixR
Short-chain alcohol dehydrogenase; IMG reference gene:2512956108; PFAM: short chain dehydrogenase; truncated by 15 aa.
  
    0.419
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.