STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0028IMG reference gene:2512955011; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (332 aa)    
Predicted Functional Partners:
RSP_0610
Putative 3-oxoacyl-(acyl-carrier-protein) reductase; IMG reference gene:2512955626; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.639
RSP_0684
Putative oxidoreductase; IMG reference gene:2512955705; PFAM: short chain dehydrogenase.
 
 
 0.608
RSP_2363
Short-chain dehydrogenase/reductase; IMG reference gene:2512954304; PFAM: short chain dehydrogenase.
 
 
 0.580
fdh
Putative Glutathione-dependent formaldehyde dehydrogenase; IMG reference gene:2512956608; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
 
  
 0.577
RSP_0517
Hypothetical protein; IMG reference gene:2512955529.
 
    0.572
RSP_0515
Hypothetical protein; IMG reference gene:2512955527.
 
    0.565
RSP_3037
Putative short-chain dehydrogenase/reductase; IMG reference gene:2512956536; PFAM: short chain dehydrogenase.
 
 
 0.553
RSP_0516
Hypothetical protein; IMG reference gene:2512955528.
 
    0.547
linC
IMG reference gene:2512953957; PFAM: short chain dehydrogenase.
 
 
 0.516
RSP_3103
IMG reference gene:2512956607; PFAM: Polyketide cyclase / dehydrase and lipid transport; TIGRFAM: PEP-CTERM protein sorting domain.
 
    0.516
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.