STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0133Transporter, NhaC family; IMG reference gene:2512955125; PFAM: Na+/H+ antiporter family; TIGRFAM: Na+/H+ antiporter NhaC; TC 2.A.35. (496 aa)    
Predicted Functional Partners:
RSP_0169
Na+/solute symporter; IMG reference gene:2512955167; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
  
 0.621
aatA
Aspartate aminotransferase; IMG reference gene:2512955793; PFAM: Aminotransferase class I and II.
   
    0.495
RSP_2341
IMG reference gene:2512954277; PFAM: Aminotransferase class I and II.
   
    0.495
aspAT
IMG reference gene:2512954946; PFAM: Aminotransferase class I and II.
   
    0.495
RSP_3437
Aspartate aminotransferase; IMG reference gene:2512956948; PFAM: Aminotransferase class I and II.
   
    0.495
RSP_3439
Aspartate aminotransferase; IMG reference gene:2512956950; PFAM: Aminotransferase class I and II.
   
    0.495
RSP_2761
IMG reference gene:2512954708; PFAM: Phage Tail Protein X.
   
    0.457
acoR-2
Acetoin transcriptional regulator, sigma54 specific, AcoR; IMG reference gene:2512956830; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain.
   
    0.457
fruA
PTS system protein D-fructose-specific IICB componenst (F1P-forming), Frc family; IMG reference gene:2512953695; PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit; TIGRFAM: PTS system, fructose-specific, IIB component; PTS system, fructose subfamily, IIC component; TC 4.A.2.1.1.
     
 0.430
metQ
ABC D-methionine uptake transporter, substrate-binding protein; IMG reference gene:2512955124; PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family.
       0.427
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.