STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_01732-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase; IMG reference gene:2512955171; PFAM: Fumarylacetoacetate (FAA) hydrolase family. (281 aa)    
Predicted Functional Partners:
RSP_3441
IMG reference gene:2512956952; PFAM: Demethylmenaquinone methyltransferase.
    
 0.903
ucpA1
Short-chain dehydrogenase; IMG reference gene:2512955172; PFAM: short chain dehydrogenase.
 
 
 0.880
hpcH
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; IMG reference gene:2512957194; PFAM: HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.745
RSP_0175
Lactate dehydrogenase-related dehydrogenase; IMG reference gene:2512955173; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
  
   0.542
RSP_3014
Putative aldolase protein; IMG reference gene:2512956512; PFAM: HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.511
RSP_0172
Putative transcriptional regulators; IMG reference gene:2512955170; PFAM: Helix-turn-helix; Predicted transcriptional regulator (DUF2083).
  
    0.489
epi
methylmalonyl-CoA epimerase; Promiscuous isomerase that catalyzes epimerization of both ethylmalonyl-CoA and methylmalonyl-CoA. Has thus a dual role in the ethylmalonyl-CoA pathway for acetyl-CoA assimilation required for R.sphaeroides growth on acetate as sole carbon source.
  
  
 0.459
gabD4
Succinate semialdehyde dehydrogenase; IMG reference gene:2512956050; PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinate-semialdehyde dehydrogenase; truncated by 19 aa; Belongs to the aldehyde dehydrogenase family.
 
 
 0.421
RSP_2679
IMG reference gene:2512954624; PFAM: Eukaryotic and archaeal DNA primase small subunit; ATP dependent DNA ligase domain; ATP dependent DNA ligase C terminal region; TIGRFAM: DNA polymerase LigD, ligase domain; DNA ligase D; DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain.
  
  
 0.412
RSP_2793
Putative reductase component of monooxygenase; IMG reference gene:2512954822; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain.
  
  
 0.406
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.