STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0184N-carbamoyl-L-amino acid amidohydrolase; IMG reference gene:2512955181; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidase, hydantoinase/carbamoylase family. (419 aa)    
Predicted Functional Partners:
dht
Dihydropyrimidinase; IMG reference gene:2512955180; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase; truncated by 18 aa.
 
 
 0.989
RSP_3462
Dihydropyrimidinase; IMG reference gene:2512956973; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase.
 
 
 0.966
RSP_3446
N-carbamoyl-L-amino acid amidohydrolase; IMG reference gene:2512956957; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family.
  
  
 
0.928
RSP_0187
Dihydropyrimidine dehydrogenase; IMG reference gene:2512955184; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein.
 
 0.927
RSP_0189
NADPH-dependent glutamate synthase beta chain-related oxidoreductase; IMG reference gene:2512955186; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
 
 
  0.885
RSP_1554
Putative polysaccharide deacetylase; IMG reference gene:2512953450; PFAM: OHCU decarboxylase; Polysaccharide deacetylase; TIGRFAM: OHCU decarboxylase; putative urate catabolism protein.
  
 0.859
RSP_1292
IMG reference gene:2512956338; PFAM: Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
 
 
 
  0.806
RSP_1041
malonyl-CoA synthase; IMG reference gene:2512956081; PFAM: AMP-binding enzyme.
   
 
  0.802
RSP_1507
Aldehyde dehydrogenase; IMG reference gene:2512953399; PFAM: Aldehyde dehydrogenase family.
 
 
 
  0.801
RSP_2372
IMG reference gene:2512954312; PFAM: Aldehyde dehydrogenase family.
 
   
  0.800
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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