STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0185Transcriptional regulator, TetR family; IMG reference gene:2512955182; PFAM: Bacterial regulatory proteins, tetR family; YcdC-like protein, C-terminal region. (210 aa)    
Predicted Functional Partners:
RSP_0184
N-carbamoyl-L-amino acid amidohydrolase; IMG reference gene:2512955181; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidase, hydantoinase/carbamoylase family.
 
    0.637
dht
Dihydropyrimidinase; IMG reference gene:2512955180; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase; truncated by 18 aa.
 
    0.572
RSP_0186
Transcriptional regulator, TetR family; IMG reference gene:2512955183; PFAM: Bacterial regulatory proteins, tetR family; YcdC-like protein, C-terminal region.
 
   
0.515
RSP_0179
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components TauA; IMG reference gene:2512955176; PFAM: NMT1/THI5 like.
 
     0.429
RSP_0187
Dihydropyrimidine dehydrogenase; IMG reference gene:2512955184; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein.
  
     0.420
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.