STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0193Hypothetical protein; IMG reference gene:2512955190; PFAM: Uncharacterized protein conserved in bacteria (DUF2155). (123 aa)    
Predicted Functional Partners:
RSP_0195
NADH-ubiquinone oxidoreductase; IMG reference gene:2512955192; PFAM: NADH ubiquinone oxidoreductase subunit NDUFA12.
 
    0.902
RSP_0194
Putative ABC transporter, substrate-binding protein; IMG reference gene:2512955191; PFAM: mce related protein.
  
    0.846
atpX
FoF1 ATP synthase, subunit B; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (By similarity).
  
    0.643
clpX
ATP-dependent protease ATP-binding subunit; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
       0.638
RSP_1239
Hypothetical protein; IMG reference gene:2512956283; PFAM: Tim44-like domain.
  
     0.626
RSP_1892
Putative Cro/CI transcriptional regulator; IMG reference gene:2512953801; PFAM: Helix-turn-helix.
  
    0.563
RSP_2950
Transcriptional regulator, LysR family; IMG reference gene:2512954915; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
    0.522
RSP_1383
IMG reference gene:2512956430; PFAM: Invasion associated locus B (IalB) protein.
  
     0.494
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.487
RSP_0838
IMG reference gene:2512955867; PFAM: DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, delta subunit.
  
    0.474
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.