Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_0200ABC transporter, periplasmic binding protein; IMG reference gene:2512955196; PFAM: Bacterial extracellular solute-binding protein. (401 aa)    
Predicted Functional Partners:
RSP_0201
ABC transporter, fused inner membrane subunits; IMG reference gene:2512955197; PFAM: Binding-protein-dependent transport system inner membrane component.
 
  
 0.971
RSP_6101
ABC transporter, ATPase subunit; IMG reference gene:2512955198; PFAM: ABC transporter.
 
   
 0.970
RSP_0198
Phosphatidylglycerophosphate synthase; IMG reference gene:2512955195; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
    0.925
gltX1
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
   
    0.614
RSP_1058
Hypothetical protein; IMG reference gene:2512956099; PFAM: SNARE associated Golgi protein.
 
  
 0.599
RSP_0202
Uncharacterized protein with SCP/PR1 domains; IMG reference gene:2512955199; PFAM: Cysteine-rich secretory protein family.
       0.490
TyrB
Aromatic amino acid aminotransferase apoenzyme; IMG reference gene:2512955918; PFAM: Aminotransferase class I and II.
   
    0.458
xthA1-2
Putative exodeoxyribonuclease III; IMG reference gene:2512956934; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth).
      0.400
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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