STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0212HNH nuclease; IMG reference gene:2512955209; PFAM: HNH endonuclease. (113 aa)    
Predicted Functional Partners:
RSP_0213
Phage terminase-like protein large subunit; IMG reference gene:2512955210; PFAM: Phage Terminase; extended by 6 aa.
 
  
 0.965
RSP_0209
Putative prophage Lp3 protein 18; IMG reference gene:2512955207; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family.
 
    0.958
ruvC
Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
      
 0.845
RSP_0208
Phage-related protein; IMG reference gene:2512955206; PFAM: Phage portal protein.
  
    0.843
RSP_0211
IMG reference gene:2512955208; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family; extended by 34 aa.
  
    0.826
RSP_0214
IMG reference gene:2512955211; PFAM: Phage QLRG family, putative DNA packaging.
  
    0.775
RSP_0207
Hypothetical protein; IMG reference gene:2512955205.
       0.774
hisB
IMG reference gene:2512954176; PFAM: Imidazoleglycerol-phosphate dehydratase.
      
 0.710
RSP_0206
Hypothetical protein; IMG reference gene:2512955204.
  
    0.662
RSP_2352
Putative terminase large subunit / phage terminase; IMG reference gene:2512954290; PFAM: Phage Terminase; extended by 26 aa.
 
  
 0.638
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.