STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0243Putative lipoprotein; IMG reference gene:2512955249; PFAM: L,D-transpeptidase catalytic domain. (342 aa)    
Predicted Functional Partners:
mepA
Murein endopeptidase; IMG reference gene:2512956410; PFAM: Penicillin-insensitive murein endopeptidase.
  
    0.619
RSP_1201
Hypothetical protein; IMG reference gene:2512956245; PFAM: L,D-transpeptidase catalytic domain.
 
  
 0.583
RSP_0570
Putative ATPase; IMG reference gene:2512955585; PFAM: YcjX-like family, DUF463.
  
     0.530
RSP_0650
Putative transglycosylase; IMG reference gene:2512955669; PFAM: Transglycosylase SLT domain.
  
    0.521
RSP_3019
Putative hydrolase; IMG reference gene:2512956517.
 
     0.501
RSP_1138
Two component transcriptional regulator, winged helix family; IMG reference gene:2512956181; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
   
    0.458
RSP_0569
TIGR01620 family protein; IMG reference gene:2512955584; PFAM: Domain of unknown function (DUF697); TIGRFAM: TIGR01620 family protein.
  
     0.448
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
       0.432
RSP_0188
Putative membrane-associated protein; IMG reference gene:2512955185; PFAM: SNARE associated Golgi protein.
 
    0.427
RSP_0715
Ribonuclease T2; IMG reference gene:2512955737; PFAM: Ribonuclease T2 family; Belongs to the RNase T2 family.
  
    0.420
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.