STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0253Glycine/D-amino acid oxidase (deaminating); IMG reference gene:2512955259; PFAM: FAD dependent oxidoreductase. (460 aa)    
Predicted Functional Partners:
soxA
Putative sarcosine oxidase, alpha subunit; IMG reference gene:2512954634; PFAM: Glycine cleavage T-protein C-terminal barrel domain; Aminomethyltransferase folate-binding domain; TIGRFAM: sarcosine oxidase, alpha subunit family, heterotetrameric form; Belongs to the GcvT family.
 
 
 0.920
stcD2
Putative NADH-dependent oxidase; IMG reference gene:2512957216; PFAM: HI0933-like protein; NADH:flavin oxidoreductase / NADH oxidase family; frameshift in old version eliminated, translation corrected; truncated by 10 aa.
  
 
 0.686
soxD
IMG reference gene:2512954633; PFAM: Sarcosine oxidase, delta subunit family; TIGRFAM: sarcosine oxidase, delta subunit family, heterotetrameric form.
  
 
 0.618
RSP_0244
Putative glutamine amidotransferase; IMG reference gene:2512955250; PFAM: Peptidase C26.
 
  
 0.579
RSP_3836
Putative metal-dependent hydrolase; IMG reference gene:2512956499; PFAM: Amidohydrolase family.
 
    0.561
RSP_0252
IMG reference gene:2512955258; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase.
  
    0.523
RSP_0312
Aminotransferase class-III; IMG reference gene:2512955321; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.506
RSP_1397
Glutathione S-transferase; IMG reference gene:2512956443.
  
    0.470
RSP_3534
IMG reference gene:2512957045; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.462
RSP_0552
Putative multidrug transporter, SMR family, DMT Superfamily; IMG reference gene:2512955566; PFAM: Small Multidrug Resistance protein.
   
    0.457
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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