STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0410Sensor diguanylate cyclase (GGDEF); IMG reference gene:2512955421; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (335 aa)    
Predicted Functional Partners:
RSP_6114
Heme-dependent protein with NO-binding domain; IMG reference gene:2512955422; PFAM: Heme NO binding.
 
  
 0.981
RSP_0329
Diguanylate cyclase with GAF sensor; IMG reference gene:2512955339; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
0.914
RSP_3513
Diguanylate cyclase with GAF sensor; IMG reference gene:2512957026; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
0.906
RSP_1305
Putative flagellar hook-associated protein; IMG reference gene:2512956351; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region.
   
 
 0.888
RSP_1063
Diguanylate cyclase/phosphodiesterase; IMG reference gene:2512956104; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 0.880
phoR1
Phosphate regulon transcriptional regulator, PhoR; IMG reference gene:2512954542; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB.
 
 
    0.852
RSP_1210
IMG reference gene:2512956253; PFAM: Response regulator receiver domain; Stage II sporulation protein E (SpoIIE); extended by 18 aa.
  
 0.825
flgI1
Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.805
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.804
fliP1
Type III secretion system inner membrane P protein; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
   
    0.802
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.