STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0432Yip1 domain-containing protein; IMG reference gene:2512955446; PFAM: Yip1 domain. (192 aa)    
Predicted Functional Partners:
RSP_0433
Yip1 domain-containing protein; IMG reference gene:2512955447; PFAM: Yip1 domain.
  
 0.991
SufC
Suf C, ATPase; IMG reference gene:2512955449; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
  
  
 0.967
RSP_0439
Hypothetical protein; IMG reference gene:2512955450; PFAM: Domain of unknown function (DUF74); Belongs to the UPF0145 family.
  
  
 0.965
SufD
SufD protein; IMG reference gene:2512955448; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD; old pseudo; mistakenly identified as pseudo based on his to fusion proteins.
  
  
 0.948
sufB
Iron-regulated ABC transporter membrane component SufB; IMG reference gene:2512955451; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.
  
  
 0.930
RSP_0442
Putative aminotransferase; IMG reference gene:2512955452; PFAM: Aminotransferase class-V.
  
  
 0.856
RSP_0431
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
    0.839
RSP_0443
IMG reference gene:2512955453; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein.
  
  
 0.795
RSP_1098
IMG reference gene:2512956143; PFAM: Protein of unknown function (DUF3035).
  
     0.756
RSP_6095
Putative transcriptional activator; IMG reference gene:2512955111; PFAM: Autoinducer binding domain.
  
     0.712
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.