STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0465Putative protease; IMG reference gene:2512955476; PFAM: Peptidase family U32. (326 aa)    
Predicted Functional Partners:
RSP_0464
Putative protease; IMG reference gene:2512955475; PFAM: Peptidase family U32.
 
 0.998
RSP_0466
Putative lipid carrier protein; IMG reference gene:2512955477; PFAM: SCP-2 sterol transfer family.
 
  
 0.994
ubiD
3-octaprenyl-4hydroxybenzoate decarboxylase; IMG reference gene:2512955478; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases; Belongs to the UbiD family.
 
    0.813
ubiX
Putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
    0.728
RSP_0157
Beta-mannanase; IMG reference gene:2512955154; PFAM: Glycosyl hydrolase family 26; Belongs to the glycosyl hydrolase 26 family.
  
    0.643
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
      
 0.632
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.628
tldD
Microcin-processing peptidase 2; IMG reference gene:2512953733; PFAM: Putative modulator of DNA gyrase.
      
 0.615
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
     
 0.611
RSP_2830
Uncharacterized protein involved in response to NO; IMG reference gene:2512954778; PFAM: NnrS protein.
 
    0.608
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.