Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_0484TRAP-T family transporter, DctM (12 TMs) subunit; IMG reference gene:2512955496; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit. (426 aa)    
Predicted Functional Partners:
RSP_0485
TRAP-T family transporter, DctQ (4 TMs) subunit; IMG reference gene:2512955497; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
 
 0.972
RSP_0487
TRAP-T family transporter, DctP (periplasmic binding) subunit; IMG reference gene:2512955498; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family.
  
 0.924
RSP_3661
IMG reference gene:2512957196; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family.
  
 0.922
uxaC
Uronate isomerase; IMG reference gene:2512955499; PFAM: Glucuronate isomerase.
 
    0.805
RSP_1605
TRAP-T family transporter, periplasmic binding protein, DctP; IMG reference gene:2512953503; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family.
 
  
 0.790
dctP
TRAP-T family transporter, C4-dicarboxylate-binding protein DctP; IMG reference gene:2512955942; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family.
  
 0.787
RSP_0483
Cupin domain-containing protein; IMG reference gene:2512955495; PFAM: Cupin domain.
  
    0.783
RSP_3453
IMG reference gene:2512956964; PFAM: Bacterial extracellular solute-binding protein, family 7.
 
  
 0.699
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
    0.644
dctQ
TRAP-T family C4-dicarboxylate transporter, DctQ (4TMs) subunit; IMG reference gene:2512955943; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
 0.629
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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