STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0487TRAP-T family transporter, DctP (periplasmic binding) subunit; IMG reference gene:2512955498; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family. (325 aa)    
Predicted Functional Partners:
RSP_0485
TRAP-T family transporter, DctQ (4 TMs) subunit; IMG reference gene:2512955497; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
  
 0.948
RSP_0484
TRAP-T family transporter, DctM (12 TMs) subunit; IMG reference gene:2512955496; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
  
 0.936
uxaC
Uronate isomerase; IMG reference gene:2512955499; PFAM: Glucuronate isomerase.
 
  
 0.923
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.855
dctM
TRAP-T family C4-dicarboxylate transporter, DctM (12TMs) subunit; IMG reference gene:2512955944; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
  
 0.823
RSP_3662
TRAP-T family transporter, large (12TMs) inner membrane subunit; IMG reference gene:2512957197; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
  
 0.818
RSP_1602
TRAP-T family transporter, DctM (12TMs) subunit; IMG reference gene:2512953501; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
  
 0.816
RSP_3451
TRAP-T family transporter, large (12TMs) inner membrane subunit; IMG reference gene:2512956962; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
  
 0.802
RSP_0634
TRAP-T family transporter, DctM (12 TMs) subunit; IMG reference gene:2512955653; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
  
 0.801
RSP_0489
Transcriptional regulator, GntR family; IMG reference gene:2512955500; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
     
 0.796
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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