STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0520NAD-dependent dehydratase/epimerase; IMG reference gene:2512955532; PFAM: NAD dependent epimerase/dehydratase family. (368 aa)    
Predicted Functional Partners:
RSP_0517
Hypothetical protein; IMG reference gene:2512955529.
 
    0.965
RSP_0518
Putative glycosyltransferase protein; IMG reference gene:2512955530; PFAM: Glycosyl transferases group 1.
 
  
 0.958
RSP_0515
Hypothetical protein; IMG reference gene:2512955527.
 
    0.955
RSP_0516
Hypothetical protein; IMG reference gene:2512955528.
 
    0.955
RSP_0522
Putative oxidoreductase; IMG reference gene:2512955534; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
 
  
 0.890
RSP_0521
Putative Zn-containing dehydrogenase; IMG reference gene:2512955533; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
 
  
 0.879
RSP_0519
NAD-dependent epimerase/dehydratase; IMG reference gene:2512955531; PFAM: NAD dependent epimerase/dehydratase family.
 
 
0.862
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
    
 0.852
RSP_1504
Hypothetical protein; IMG reference gene:2512953396.
 
    0.774
RSP_0514
dTDP-glucose 4,6-dehydratase protein; IMG reference gene:2512955526; PFAM: NAD dependent epimerase/dehydratase family.
 
 
0.716
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.