STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
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[Homology]
Score
RSP_0700Putative glycosyltransferase; IMG reference gene:2512955721; PFAM: Domain of unknown function (DUF3495); Glycosyl transferases group 1. (407 aa)    
Predicted Functional Partners:
RSP_0701
IMG reference gene:2512955722; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily.
 
    0.816
RSP_0702
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512955723; PFAM: Binding-protein-dependent transport system inner membrane component.
  
    0.804
RSP_0703
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512955724; PFAM: Binding-protein-dependent transport system inner membrane component.
  
    0.802
sqdD
Glycosyl transferase (sulfolipid biosynthesis) protein; IMG reference gene:2512954511; PFAM: Glycosyl transferase family 8; extended by 18 aa.
   
 0.775
RSP_0704
ABC peptide transporter, substrate binding protein; IMG reference gene:2512955725; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
       0.741
RSP_0621
Putative DNA helicase; IMG reference gene:2512955637; PFAM: Helicase conserved C-terminal domain; UvrD/REP helicase; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family.
    
 
 0.649
RSP_2450
Maltooligosyl trehalose hydrolase; IMG reference gene:2512954393; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; Domain of unknown function (DUF3459); TIGRFAM: malto-oligosyltrehalose trehalohydrolase.
   
 0.638
glgB1
1,4-alpha-glucan branching enzyme (Glycogen branching enzyme); Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.637
cheA1
Chemotaxis histidine protein kinase, CheA1; IMG reference gene:2512954380; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain.
   
    0.623
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.610
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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