STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0717rpsU-divergently transcribed protein; IMG reference gene:2512955739; PFAM: COQ9; TIGRFAM: rpsU-divergently transcribed protein. (230 aa)    
Predicted Functional Partners:
RSP_0716
NADPH/quinone reductase-related Zn-dependent oxidoreductase; IMG reference gene:2512955738; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: putative NAD(P)H quinone oxidoreductase, PIG3 family.
 
   0.814
rplB
LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 0.729
rpsU
SSU ribosomal protein S21P; IMG reference gene:2512955740; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
    0.658
RSP_0379
Putative aminotransferase protein; IMG reference gene:2512955389; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
    0.645
abc1
Putative ubiquinol-cytochrome-c reductase assembly protein; IMG reference gene:2512956811; PFAM: ABC1 family.
   
 
 0.642
RSP_0841
IMG reference gene:2512955870; PFAM: Domain of unknown function (DUF3576).
  
     0.639
aarF
2-octaprenylphenol hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.
   
 
 0.630
RSP_1492
2-octaprenyl-6-methoxyphenol hydroxylase; IMG reference gene:2512953384; PFAM: FAD binding domain; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family.
  
 
 0.553
RSP_2929
IMG reference gene:2512954894; PFAM: Disulfide bond formation protein DsbB.
  
    0.539
mreC
IMG reference gene:2512954262; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC.
 
     0.525
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.