STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aldAlanine dehydrogenase; IMG reference gene:2512955745; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; Belongs to the AlaDH/PNT family. (372 aa)    
Predicted Functional Partners:
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.979
PntB
Pyridine nucleotide transhydrogenase beta subunit; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
      0.911
RSP_0245
Serine-pyruvate aminotransferase/aspartate aminotransferase; IMG reference gene:2512955251; PFAM: Aminotransferase class-V.
     
 0.905
RSP_0375
Glutamate--putrescine ligase; IMG reference gene:2512955385; PFAM: Glutamine synthetase, catalytic domain.
      
 0.631
RSP_0377
L-glutamine synthetase; IMG reference gene:2512955387; PFAM: Glutamine synthetase, catalytic domain.
      
 0.631
RSP_1568
Glutamate--putrescine ligase; IMG reference gene:2512953463; PFAM: Glutamine synthetase, catalytic domain.
      
 0.631
glnA1
Glutamine synthetase class-I; IMG reference gene:2512955143; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.
      
 0.630
RSP_0722
IMG reference gene:2512955744; PFAM: AsnC family.
     
 0.588
glnA
Glutamine synthetase class-I; IMG reference gene:2512954253; PFAM: Glutamine synthetase, catalytic domain.
   
  
 0.559
xoxJ
Amino acid ABC transporter substrate-binding protein, PAAT family; IMG reference gene:2512954523; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein.
      
 0.533
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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