STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0730TIGR02302 family protein; IMG reference gene:2512955754; TIGRFAM: TIGR02302 family protein. (834 aa)    
Predicted Functional Partners:
sohB
Peptidase family S49; IMG reference gene:2512956118; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type.
      
 0.833
RSP_2941
Putative Glycoside hydrolase; IMG reference gene:2512954906; PFAM: Glycosyl hydrolase family 3 N terminal domain.
 
  
 0.807
RSP_1023
Hypothetical protein; IMG reference gene:2512956062; PFAM: Protein of unknown function DUF58.
  
  
 0.785
lysA
Orn/DAP/Arg decarboxylase, family 2; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.781
RSP_1022
IMG reference gene:2512956061; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain.
  
    0.779
RSP_6144
Putative membrane protein; IMG reference gene:2512956060; PFAM: Protein of unknown function (DUF1355).
  
     0.774
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.735
RSP_1508
Putative HemY-like membrane protein; IMG reference gene:2512953401; PFAM: HemY protein N-terminus.
  
  
 0.722
RSP_6067
Hypothetical protein; IMG reference gene:2512954688.
      
 0.701
RSP_0838
IMG reference gene:2512955867; PFAM: DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, delta subunit.
 
     0.696
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.