STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0734Cell division protein FtsX; IMG reference gene:2512955757; PFAM: Predicted permease. (300 aa)    
Predicted Functional Partners:
RSP_0733
Cell division ATP-binding protein FtsE; IMG reference gene:2512955756; PFAM: ABC transporter.
 
 0.999
RSP_0933
Membrane-bound metallopeptidase; IMG reference gene:2512955966; PFAM: Peptidase family M23.
 
 
 0.975
RSP_0735
IMG reference gene:2512955758; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases.
  
  
 0.893
RSP_1984
IMG reference gene:2512953900; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; truncated by 14 aa.
  
  
 0.875
hisC
IMG reference gene:2512954218; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
 0.875
gabD4
Succinate semialdehyde dehydrogenase; IMG reference gene:2512956050; PFAM: Aldehyde dehydrogenase family; TIGRFAM: succinate-semialdehyde dehydrogenase; truncated by 19 aa; Belongs to the aldehyde dehydrogenase family.
      
 0.826
RSP_3377
Glutathione S-transferase family protein; IMG reference gene:2512956888.
   
  
 0.822
RSP_0731
Hypothetical protein; IMG reference gene:2512955755; TIGRFAM: MJ0042 family finger-like domain; frameshift eliminated due to sequence change; joined gene, RSP_0731, RSP_0732.
 
   
 0.808
amiC
IMG reference gene:2512954945; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes.
 
   
 0.749
ssb
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
  
 0.728
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.