STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0820Putative cytochrome B561; IMG reference gene:2512955849; PFAM: Prokaryotic cytochrome b561. (169 aa)    
Predicted Functional Partners:
RSP_6134
Hypothetical protein; IMG reference gene:2512955848.
       0.683
fbcQ
Cytochrome b-c1 subunit IV; IMG reference gene:2512954632.
   
  
 0.631
nuoJ1
NADH dehydrogenase I chain J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
    0.623
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
   
  
 0.594
crtD
Methoxyneurosporene dehydrogenase; Catalyzes the introduction of C-3,4 double bonds into 1- hydroxyneurosporene (1-HO-Neu) to yield demethylspheroidene (DMS). It prefer the acyclic carotenoids such as 1-hydroxylycopene, and 1- hydroxy-gamma-carotene, whereas 1-hydroxy-3,4-didehydrolycopene and 1,1-dihydroxylycopene are much less effective.
   
    0.577
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
   
  
 0.527
bchJ
Bacteriochlorophyll synthase, 23 kDa subunit (bchJ); IMG reference gene:2512955287; PFAM: V4R domain; TIGRFAM: bacteriochlorophyll 4-vinyl reductase.
  
    0.516
bchO
Magnesium-chelatase, BchO; IMG reference gene:2512955282; TIGRFAM: putative magnesium chelatase accessory protein.
   
  
 0.478
hemA
5-aminolevulinate synthase; IMG reference gene:2512954950; PFAM: Aminotransferase class I and II; TIGRFAM: 5-aminolevulinic acid synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
   
  
 0.476
RSP_0111
IMG reference gene:2512955102; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; old pseudo; frameshift corrected.
   
    0.457
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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