STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0850Hypothetical protein; IMG reference gene:2512955880; PFAM: VIT family; Rubrerythrin. (325 aa)    
Predicted Functional Partners:
RSP_2793
Putative reductase component of monooxygenase; IMG reference gene:2512954822; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain.
  
 
 0.760
sitA
ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA; IMG reference gene:2512955936; PFAM: Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.
   
  
 0.730
sitC
ABC Mn+2/Fe+2 transporter, inner membrane subunit SitC; IMG reference gene:2512955938; PFAM: ABC 3 transport family.
   
  
 0.674
expE1
IMG reference gene:2512957020; PFAM: Hemolysin-type calcium-binding repeat (2 copies); TIGRFAM: type 1 secretion C-terminal target domain (VC_A0849 subclass).
   
  
 0.665
sitB
ABC Mn+2/Fe+2 transporter, ATPase subunit SitB; IMG reference gene:2512955937; PFAM: ABC transporter.
   
  
 0.634
catA
Catalase; IMG reference gene:2512954729; PFAM: Catalase; Catalase-related immune-responsive.
  
  
 0.629
RSP_1113
IMG reference gene:2512956157; PFAM: Hemolysin-type calcium-binding repeat (2 copies).
      
 0.615
RSP_0443
IMG reference gene:2512955453; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein.
   
  
 0.585
SufD
SufD protein; IMG reference gene:2512955448; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD; old pseudo; mistakenly identified as pseudo based on his to fusion proteins.
  
  
 0.549
RSP_0853
Hypothetical protein; IMG reference gene:2512955883; PFAM: Uncharacterized BCR, YaiI/YqxD family COG1671; Belongs to the UPF0178 family.
       0.547
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.