Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RSP_0858 | RSP_0860 | RSP_0858 | RSP_0860 | Putative transporter, RhaT family, DMT superfamily; IMG reference gene:2512955889; PFAM: EamA-like transporter family. | Hypothetical protein; IMG reference gene:2512955891. | 0.433 |
RSP_0858 | leuB | RSP_0858 | RSP_0859 | Putative transporter, RhaT family, DMT superfamily; IMG reference gene:2512955889; PFAM: EamA-like transporter family. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily. | 0.483 |
RSP_0858 | psd | RSP_0858 | RSP_0719 | Putative transporter, RhaT family, DMT superfamily; IMG reference gene:2512955889; PFAM: EamA-like transporter family. | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.499 |
RSP_0860 | RSP_0858 | RSP_0860 | RSP_0858 | Hypothetical protein; IMG reference gene:2512955891. | Putative transporter, RhaT family, DMT superfamily; IMG reference gene:2512955889; PFAM: EamA-like transporter family. | 0.433 |
RSP_0860 | leuB | RSP_0860 | RSP_0859 | Hypothetical protein; IMG reference gene:2512955891. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily. | 0.611 |
leuB | RSP_0858 | RSP_0859 | RSP_0858 | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily. | Putative transporter, RhaT family, DMT superfamily; IMG reference gene:2512955889; PFAM: EamA-like transporter family. | 0.483 |
leuB | RSP_0860 | RSP_0859 | RSP_0860 | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily. | Hypothetical protein; IMG reference gene:2512955891. | 0.611 |
psd | RSP_0858 | RSP_0719 | RSP_0858 | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | Putative transporter, RhaT family, DMT superfamily; IMG reference gene:2512955889; PFAM: EamA-like transporter family. | 0.499 |