STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vacJPutative lipoprotein; IMG reference gene:2512955923; PFAM: VacJ like lipoprotein. (262 aa)    
Predicted Functional Partners:
RSP_0890
Putative yrbC precursor; IMG reference gene:2512955922; PFAM: Toluene tolerance, Ttg2.
 
 
 
 0.977
RSP_0194
Putative ABC transporter, substrate-binding protein; IMG reference gene:2512955191; PFAM: mce related protein.
 
  
 0.859
RSP_3328
Hypothetical protein; IMG reference gene:2512956836.
  
 
 0.817
RSP_0842
Putative porin; IMG reference gene:2512955871.
   
 
 0.816
RSP_2458
ABC transporter, ATPase subunit; IMG reference gene:2512954401; PFAM: ABC transporter.
 
  
 0.792
RSP_2459
ABC transporter, inner membrane subunit; IMG reference gene:2512954402; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.
 
  
 0.762
RSP_2288
Hypothetical protein; IMG reference gene:2512954223.
   
    0.645
RSP_0893
IMG reference gene:2512955925; PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
    0.632
RSP_3349
Hypothetical protein; IMG reference gene:2512956857.
   
    0.623
RSP_0892
ABC protein toxin exporter, fused ATPase and inner membrane domain protein; IMG reference gene:2512955924; PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: type I secretion system ABC transporter, PrtD family.
       0.583
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.