STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_0895Phosphodiesterase; IMG reference gene:2512955927; PFAM: Glycerophosphoryl diester phosphodiesterase family. (256 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.859
RSP_0894
Putative translation initiation inhibitor, yjgF family; IMG reference gene:2512955926; PFAM: Endoribonuclease L-PSP.
  
    0.845
blrB
Blue-light receptor of the BLUF-family; IMG reference gene:2512956305; PFAM: Sensors of blue-light using FAD.
   
  
 0.838
aqpZ
IMG reference gene:2512954732; PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.710
glpD
Homodimeric glycerol 3-phosphate dehydrogenase (quinone); IMG reference gene:2512954614; PFAM: FAD dependent oxidoreductase; truncated by 7 aa; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
 
 0.702
RSP_0896
Hypothetical protein; IMG reference gene:2512955928; PFAM: Protein of unknown function, DUF482; trucated by 22 aa.
  
    0.675
DCOHM
Pterin dehydratase; IMG reference gene:2512955930; PFAM: Pterin 4 alpha carbinolamine dehydratase.
  
   0.670
trmJ
tRNA/rRNA methyltransferase (SpoU); Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
  
  
 0.640
appA
IMG reference gene:2512953460; PFAM: Sensors of blue-light using FAD.
   
  
 0.629
ctrA
Two component transcriptional regulator, winged helix family; IMG reference gene:2512954565; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
      
 0.625
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.