STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1024Putative MoxR family protein; IMG reference gene:2512956063; PFAM: ATPase family associated with various cellular activities (AAA). (338 aa)    
Predicted Functional Partners:
RSP_1023
Hypothetical protein; IMG reference gene:2512956062; PFAM: Protein of unknown function DUF58.
  
 0.979
RSP_6144
Putative membrane protein; IMG reference gene:2512956060; PFAM: Protein of unknown function (DUF1355).
 
     0.907
RSP_1022
IMG reference gene:2512956061; PFAM: Aerotolerance regulator N-terminal; TIGRFAM: N-terminal double-transmembrane domain.
 
     0.880
RSP_3278
IMG reference gene:2512956784; PFAM: von Willebrand factor type A domain.
 
  
 0.671
RSP_2719
Transcriptional regulator, AsnC/Lrp family; IMG reference gene:2512954664; PFAM: AsnC family.
   
  
 0.641
RSP_3276
Hypothetical protein; IMG reference gene:2512956782; PFAM: Protein of unknown function DUF58.
 
  
 0.640
lig2
DNA ligase; IMG reference gene:2512954357; PFAM: ATP dependent DNA ligase domain; DNA ligase N terminus; ATP dependent DNA ligase C terminal region; TIGRFAM: DNA ligase, ATP-dependent, PP_1105 family.
      
 0.639
RSP_1025
Hypothetical protein; IMG reference gene:2512956064; PFAM: Protein of unknown function (DUF1285).
       0.637
RSP_1352
D-3-phosphoglycerate dehydrogenase; IMG reference gene:2512956399; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase.
      
 0.631
RSP_2853
Transcriptional regulator, TetR family; IMG reference gene:2512954751; PFAM: Bacterial regulatory proteins, tetR family.
      
 0.631
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.