STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1027Hypothetical protein; IMG reference gene:2512956066; PFAM: Zinc-finger domain; truncated by 13 aa. (59 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.787
RSP_2616
Small protein A (tmRNA-binding); IMG reference gene:2512954560; PFAM: SmpA / OmlA family.
  
     0.582
RSP_1042
ATPase involved in chromosome partitioning; IMG reference gene:2512956082; PFAM: ATPase MipZ.
  
     0.569
RSP_0841
IMG reference gene:2512955870; PFAM: Domain of unknown function (DUF3576).
  
     0.536
RSP_1025
Hypothetical protein; IMG reference gene:2512956064; PFAM: Protein of unknown function (DUF1285).
       0.527
RSP_1026
IMG reference gene:2512956065; PFAM: Protein of unknown function (DUF2798).
       0.527
RSP_6239
IMG reference gene:2512956485; PFAM: Protein of unknown function (DUF3553).
  
     0.522
RSP_0717
rpsU-divergently transcribed protein; IMG reference gene:2512955739; PFAM: COQ9; TIGRFAM: rpsU-divergently transcribed protein.
  
     0.479
RSP_2119
Hypothetical protein; IMG reference gene:2512954042; TIGRFAM: conserved hypothetical protein.
  
    0.477
RSP_0631
Hypothetical protein; IMG reference gene:2512955647; PFAM: Uncharacterised protein family (UPF0262); Belongs to the UPF0262 family.
  
   
 0.463
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.