STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1129Hypothetical protein; IMG reference gene:2512956172; extended by 16 aa. (110 aa)    
Predicted Functional Partners:
RSP_1130
Putative membrane protein; IMG reference gene:2512956173; PFAM: Protein of unknown function (DUF421).
  
    0.774
RSP_6107
Hypothetical protein; IMG reference gene:2512955255.
  
     0.761
dapE
Succinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
  
    0.737
RSP_6113
IMG reference gene:2512955375; PFAM: Protein of unknown function (DUF2842).
  
     0.735
RSP_2263
IMG reference gene:2512954193; PFAM: Protein of unknown function (DUF2927).
  
     0.727
RSP_0959
ATPase; IMG reference gene:2512955995; truncated by 58 aa.
  
     0.720
RSP_2097
Putative FtsL; IMG reference gene:2512954021.
  
     0.720
ElaA
Acetyltransferase, GNAT family; IMG reference gene:2512956170; PFAM: Acetyltransferase (GNAT) family.
       0.692
RSP_0811
Putative secreted protein; IMG reference gene:2512955839; PFAM: Protein of unknown function (DUF1467).
  
     0.671
ftsQ
Cell division septal protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.669
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.