STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaJSugar transferase; IMG reference gene:2512956234; PFAM: Bacterial sugar transferase. (214 aa)    
Predicted Functional Partners:
wcaG
Nucleotide sugar epimerase/dehydratase; IMG reference gene:2512956233; PFAM: Polysaccharide biosynthesis protein.
  
 0.997
exoP
Putative succinoglycan biosynthesis transport protein ExoP; IMG reference gene:2512954505; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; exopolysaccharide transport protein family; extended by 18 aa.
 
  
 0.983
xanB
IMG reference gene:2512955862; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.937
RSP_1190
IMG reference gene:2512956235; PFAM: NAD dependent epimerase/dehydratase family.
 
  
 0.937
exoF
Outer membrane polysaccharide export protein, exoF; IMG reference gene:2512954492; PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
 
  
 0.875
exoO
IMG reference gene:2512954495; PFAM: Glycosyl transferase family 2.
 
  
 0.864
exoQ
Putative polysaccharide polymerase; IMG reference gene:2512954493; PFAM: O-Antigen ligase.
 
  
 0.848
exoU
IMG reference gene:2512954496; PFAM: Glycosyl transferase family 2.
 
  
 0.818
exoM
Succinoglycan biosynthesis protein exoM; IMG reference gene:2512954506; PFAM: Glycosyl transferase family 2.
 
  
 0.814
RSP_1191
Transcriptional regulator, MarR family; IMG reference gene:2512956236.
  
  
 0.788
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.