STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1245Putative oxidoreductase, Gfo/Idh/MocA family; IMG reference gene:2512956289; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold. (381 aa)    
Predicted Functional Partners:
RSP_1244
Putative IolE, Sugar phosphate isomerase/epimerase; IMG reference gene:2512956288; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel.
 
  
 0.980
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; IMG reference gene:2512956789; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Belongs to the TPP enzyme family.
 
  
 0.884
RSP_1249
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; IMG reference gene:2512956292; PFAM: family; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
    0.862
iolB
5-deoxyglucuronate isomerase; IMG reference gene:2512956791; PFAM: KduI/IolB family.
  
  
 0.861
RSP_6150
Monosaccharide ABC transporter membrane protein, CUT2 family; IMG reference gene:2512956291; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
    0.824
RSP_1247
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; IMG reference gene:2512956290; PFAM: ABC transporter.
  
  
 0.815
RSP_1243
Transcriptional regulator, LacI family; IMG reference gene:2512956287; PFAM: Bacterial regulatory proteins, lacI family; family.
 
  
 0.693
RSP_3671
D-tagatose 3-epimerase; IMG reference gene:2512957205; PFAM: Xylose isomerase-like TIM barrel.
 
  
 0.656
iolE
2-keto-myo-inositol dehydratase; IMG reference gene:2512956790; PFAM: Xylose isomerase-like TIM barrel.
 
  
 0.605
RSP_1242
Lactoylglutathione lyase-like lyase; IMG reference gene:2512956286.
  
    0.551
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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