STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1455N-carbamoyl-L-amino acid amidohydrolase; IMG reference gene:2512953346; PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidase, hydantoinase/carbamoylase family. (424 aa)    
Predicted Functional Partners:
RSP_1456
Phosphotransferase family protein; IMG reference gene:2512953347; PFAM: Phosphotransferase enzyme family.
 
    0.874
RSP_1554
Putative polysaccharide deacetylase; IMG reference gene:2512953450; PFAM: OHCU decarboxylase; Polysaccharide deacetylase; TIGRFAM: OHCU decarboxylase; putative urate catabolism protein.
   
 0.854
RSP_1457
Putative choline kinase; IMG reference gene:2512953348; PFAM: Choline/ethanolamine kinase.
 
    0.846
RSP_1453
ABC peptide/nickel/opine transporter, inner membrane subunit; IMG reference gene:2512953344; PFAM: Binding-protein-dependent transport system inner membrane component.
 
    0.827
RSP_1452
ABC peptide/nickel/opine transporter, inner membrane subunit; IMG reference gene:2512953343; PFAM: Binding-protein-dependent transport system inner membrane component.
 
    0.823
RSP_1454
ABC peptide/nickel/opine transporter, fused ATPase subunits; IMG reference gene:2512953345; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
 
    0.823
RSP_3462
Dihydropyrimidinase; IMG reference gene:2512956973; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase.
 
 
 0.805
dht
Dihydropyrimidinase; IMG reference gene:2512955180; PFAM: Amidohydrolase family; TIGRFAM: D-hydantoinase; truncated by 18 aa.
 
 
 0.788
RSP_1451
ABC peptide/nickel/opine transporter, periplasmic substrate-binding protein; IMG reference gene:2512953342; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
    0.739
RSP_1876
Integral membrane protein; IMG reference gene:2512953786; PFAM: Integral membrane protein (DUF2244).
   
    0.577
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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